Variant report

Variant	rs1506358
Chromosome Location	chr4:126356414-126356415
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10006602	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857105	1.00[EUR][1000 genomes]
rs11932005	1.00[EUR][1000 genomes]
rs13119663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13144799	1.00[EUR][1000 genomes]
rs13144803	1.00[EUR][1000 genomes]
rs1354711	1.00[EUR][1000 genomes]
rs1354712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1395232	1.00[EUR][1000 genomes]
rs1395234	1.00[EUR][1000 genomes]
rs1395235	1.00[EUR][1000 genomes]
rs1395242	1.00[EUR][1000 genomes]
rs1396687	1.00[EUR][1000 genomes]
rs1506356	1.00[EUR][1000 genomes]
rs1509293	1.00[EUR][1000 genomes]
rs1509294	1.00[EUR][1000 genomes]
rs1509295	1.00[EUR][1000 genomes]
rs1509296	1.00[EUR][1000 genomes]
rs1509297	1.00[EUR][1000 genomes]
rs1509298	1.00[EUR][1000 genomes]
rs1509301	1.00[EUR][1000 genomes]
rs1553713	1.00[EUR][1000 genomes]
rs1605825	1.00[EUR][1000 genomes]
rs1605826	1.00[EUR][1000 genomes]
rs1605827	1.00[EUR][1000 genomes]
rs1911107	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1912041	1.00[EUR][1000 genomes]
rs1912042	1.00[EUR][1000 genomes]
rs1983118	1.00[EUR][1000 genomes]
rs2036723	1.00[EUR][1000 genomes]
rs2390835	1.00[EUR][1000 genomes]
rs28566737	1.00[EUR][1000 genomes]
rs4508902	1.00[EUR][1000 genomes]
rs4834032	1.00[EUR][1000 genomes]
rs4834033	1.00[EUR][1000 genomes]
rs4834034	1.00[EUR][1000 genomes]
rs4834036	1.00[EUR][1000 genomes]
rs4834037	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4834038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6534479	1.00[EUR][1000 genomes]
rs6833240	1.00[EUR][1000 genomes]
rs6851018	1.00[EUR][1000 genomes]
rs72914988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656590	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7660088	1.00[EUR][1000 genomes]
rs7660325	1.00[EUR][1000 genomes]
rs7667605	1.00[EUR][1000 genomes]
rs7675556	1.00[EUR][1000 genomes]
rs7678076	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs925241	1.00[EUR][1000 genomes]
rs958415	1.00[EUR][1000 genomes]
rs988933	1.00[EUR][1000 genomes]
rs9994836	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9996895	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830051	chr4:126234895-126403426	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv470070	chr4:126299145-126408586	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126334600-126390400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:126335200-126400800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:126337000-126364400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:126337800-126356600	Weak transcription	Liver	Liver
5	chr4:126338600-126371000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:126338800-126371400	Weak transcription	Fetal Intestine Large	intestine
7	chr4:126342400-126375400	Weak transcription	Right Ventricle	heart
8	chr4:126342600-126371800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:126345000-126369600	Weak transcription	Ovary	ovary
10	chr4:126345000-126371400	Weak transcription	Fetal Stomach	stomach
11	chr4:126345000-126371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:126345000-126373200	Weak transcription	Lung	lung
13	chr4:126345600-126369400	Weak transcription	Fetal Kidney	kidney
14	chr4:126345600-126369600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:126345600-126369600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:126347800-126382800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:126351600-126356600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:126351600-126369400	Weak transcription	Fetal Brain Female	brain
19	chr4:126353400-126373000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:126353600-126367400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:126353600-126371400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:126353600-126377000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:126355000-126369600	Weak transcription	NHLF	lung
24	chr4:126355000-126399600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:126355200-126369400	Weak transcription	HUVEC	blood vessel
26	chr4:126355400-126357000	Strong transcription	Colon Smooth Muscle	Colon
27	chr4:126355400-126357000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr4:126355400-126358200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:126355600-126369800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:126356000-126357800	Weak transcription	Placenta	Placenta
31	chr4:126356000-126369800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:126356000-126391600	Weak transcription	HSMM	muscle
33	chr4:126356200-126359000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:126356200-126359000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:126356200-126359200	Strong transcription	Fetal Lung	lung
36	chr4:126356200-126370600	Weak transcription	Aorta	Aorta
37	chr4:126356200-126370600	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:126356400-126357000	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr4:126356400-126358200	Weak transcription	Left Ventricle	heart
40	chr4:126356400-126369800	Weak transcription	Adipose Nuclei	Adipose
41	chr4:126356400-126414200	Weak transcription	Osteobl	bone

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