Variant report

Variant	rs28566737
Chromosome Location	chr4:126480366-126480367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10006602	1.00[EUR][1000 genomes]
rs10857105	1.00[EUR][1000 genomes]
rs11932005	1.00[EUR][1000 genomes]
rs13119663	1.00[EUR][1000 genomes]
rs13144799	1.00[EUR][1000 genomes]
rs13144803	1.00[EUR][1000 genomes]
rs1354711	1.00[EUR][1000 genomes]
rs1354712	1.00[EUR][1000 genomes]
rs1395232	1.00[EUR][1000 genomes]
rs1395234	1.00[EUR][1000 genomes]
rs1395235	1.00[EUR][1000 genomes]
rs1395242	1.00[EUR][1000 genomes]
rs1396687	1.00[EUR][1000 genomes]
rs1506356	1.00[EUR][1000 genomes]
rs1506358	1.00[EUR][1000 genomes]
rs1509293	1.00[EUR][1000 genomes]
rs1509294	1.00[EUR][1000 genomes]
rs1509295	1.00[EUR][1000 genomes]
rs1509296	1.00[EUR][1000 genomes]
rs1509297	1.00[EUR][1000 genomes]
rs1509298	1.00[EUR][1000 genomes]
rs1509301	1.00[EUR][1000 genomes]
rs1553713	1.00[EUR][1000 genomes]
rs1605825	1.00[EUR][1000 genomes]
rs1605826	1.00[EUR][1000 genomes]
rs1605827	1.00[EUR][1000 genomes]
rs1911107	1.00[EUR][1000 genomes]
rs1912041	1.00[EUR][1000 genomes]
rs1912042	1.00[EUR][1000 genomes]
rs1983118	1.00[EUR][1000 genomes]
rs2036723	1.00[EUR][1000 genomes]
rs2390835	1.00[EUR][1000 genomes]
rs28582365	0.83[AFR][1000 genomes]
rs4508902	1.00[EUR][1000 genomes]
rs4834032	1.00[EUR][1000 genomes]
rs4834033	1.00[EUR][1000 genomes]
rs4834034	1.00[EUR][1000 genomes]
rs4834036	1.00[EUR][1000 genomes]
rs4834037	1.00[EUR][1000 genomes]
rs4834038	1.00[EUR][1000 genomes]
rs6534479	1.00[EUR][1000 genomes]
rs6833240	1.00[EUR][1000 genomes]
rs6851018	1.00[EUR][1000 genomes]
rs72914988	1.00[EUR][1000 genomes]
rs7656590	1.00[EUR][1000 genomes]
rs7660088	1.00[EUR][1000 genomes]
rs7660325	1.00[EUR][1000 genomes]
rs7667605	1.00[EUR][1000 genomes]
rs7675556	1.00[EUR][1000 genomes]
rs7678076	1.00[EUR][1000 genomes]
rs925241	1.00[EUR][1000 genomes]
rs958415	1.00[EUR][1000 genomes]
rs988933	1.00[EUR][1000 genomes]
rs9994836	1.00[EUR][1000 genomes]
rs9996895	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003442	chr4:126474297-126588983	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126473200-126481800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:126476000-126481200	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:126477800-126481000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:126479800-126481200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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