Variant report

Variant	rs1506362
Chromosome Location	chr4:126402308-126402309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10010000	0.87[AFR][1000 genomes]
rs10021774	1.00[AFR][1000 genomes]
rs10025691	1.00[AFR][1000 genomes]
rs10025821	0.87[AFR][1000 genomes]
rs10031471	1.00[AFR][1000 genomes]
rs10084893	1.00[AFR][1000 genomes]
rs11098811	1.00[AFR][1000 genomes]
rs11941296	0.87[AFR][1000 genomes]
rs12640965	1.00[AFR][1000 genomes]
rs12650153	0.87[AFR][1000 genomes]
rs1355159	1.00[AFR][1000 genomes]
rs1395243	0.87[AFR][1000 genomes]
rs1848579	1.00[AFR][1000 genomes]
rs1983117	1.00[AFR][1000 genomes]
rs2036724	1.00[AFR][1000 genomes]
rs2135428	0.87[AFR][1000 genomes]
rs2135429	1.00[AFR][1000 genomes]
rs2390836	1.00[AFR][1000 genomes]
rs2390837	1.00[AFR][1000 genomes]
rs2390839	1.00[AFR][1000 genomes]
rs2390840	0.87[AFR][1000 genomes]
rs2390841	0.86[AFR][1000 genomes]
rs2893131	1.00[AFR][1000 genomes]
rs4585321	0.87[AFR][1000 genomes]
rs4605670	0.87[AFR][1000 genomes]
rs4834030	0.87[AFR][1000 genomes]
rs4834041	0.87[AFR][1000 genomes]
rs4834043	0.87[AFR][1000 genomes]
rs4834047	1.00[AFR][1000 genomes]
rs6534480	1.00[AFR][1000 genomes]
rs6816596	0.87[AFR][1000 genomes]
rs6851098	0.87[AFR][1000 genomes]
rs7656135	0.87[AFR][1000 genomes]
rs7661747	0.86[AFR][1000 genomes]
rs7661810	0.87[AFR][1000 genomes]
rs7667605	0.87[AFR][1000 genomes]
rs7668690	1.00[AFR][1000 genomes]
rs7699122	0.87[AFR][1000 genomes]
rs958844	0.87[AFR][1000 genomes]
rs963397	0.87[AFR][1000 genomes]
rs988314	0.87[AFR][1000 genomes]
rs988315	1.00[AFR][1000 genomes]
rs988863	0.87[AFR][1000 genomes]
rs9968423	1.00[AFR][1000 genomes]
rs9991326	0.87[AFR][1000 genomes]
rs9995153	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830051	chr4:126234895-126403426	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv470070	chr4:126299145-126408586	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126356400-126414200	Weak transcription	Osteobl	bone
2	chr4:126372000-126402600	Weak transcription	Adipose Nuclei	Adipose
3	chr4:126372200-126411200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:126373600-126411000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:126377400-126402600	Weak transcription	Fetal Intestine Large	intestine
6	chr4:126381000-126411200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:126382600-126402600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:126383400-126412200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:126384000-126413200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:126384200-126404200	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:126384200-126411800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:126384400-126418000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:126388400-126413800	Weak transcription	NHDF-Ad	bronchial
14	chr4:126388600-126411200	Weak transcription	Fetal Intestine Small	intestine
15	chr4:126388800-126411200	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:126389200-126413400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:126390000-126402600	Weak transcription	Left Ventricle	heart
18	chr4:126390000-126411000	Weak transcription	Placenta	Placenta
19	chr4:126390000-126411000	Weak transcription	Lung	lung
20	chr4:126390800-126408600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:126391000-126411400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:126391200-126402600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:126391400-126402800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:126391600-126402600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:126391600-126409400	Weak transcription	Ovary	ovary
26	chr4:126391800-126402400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:126391800-126410200	Weak transcription	Fetal Heart	heart
28	chr4:126392000-126402600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:126392000-126403000	Weak transcription	HSMM	muscle
30	chr4:126392200-126402600	Weak transcription	Liver	Liver
31	chr4:126392200-126402600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:126392200-126411000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:126392200-126411400	Weak transcription	Fetal Brain Male	brain
34	chr4:126395000-126411800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr4:126395200-126402600	Weak transcription	HUVEC	blood vessel
36	chr4:126396200-126406000	Strong transcription	Fetal Lung	lung
37	chr4:126398000-126413600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:126398600-126402600	Weak transcription	Right Ventricle	heart
39	chr4:126398800-126411000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:126399000-126411800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr4:126399200-126405200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:126399400-126411200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:126399600-126410400	Weak transcription	Fetal Brain Female	brain
44	chr4:126399600-126411200	Weak transcription	Brain Germinal Matrix	brain
45	chr4:126399800-126402600	Weak transcription	Pancreas	Pancrea
46	chr4:126399800-126404600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:126400200-126402600	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:126400200-126411000	Weak transcription	Fetal Stomach	stomach
49	chr4:126400400-126402600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:126401000-126402400	Weak transcription	Stomach Smooth Muscle	stomach

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