Variant report

Variant	rs7661747
Chromosome Location	chr4:126421139-126421140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10021774	0.86[AFR][1000 genomes]
rs10025691	0.86[AFR][1000 genomes]
rs10031471	0.86[AFR][1000 genomes]
rs10084893	0.86[AFR][1000 genomes]
rs11098811	0.86[AFR][1000 genomes]
rs12640965	0.86[AFR][1000 genomes]
rs1354709	0.86[AFR][1000 genomes]
rs1355159	0.86[AFR][1000 genomes]
rs1506362	0.86[AFR][1000 genomes]
rs1848579	0.86[AFR][1000 genomes]
rs1983117	0.86[AFR][1000 genomes]
rs2036724	0.86[AFR][1000 genomes]
rs2135429	0.86[AFR][1000 genomes]
rs2390836	0.86[AFR][1000 genomes]
rs2390837	0.86[AFR][1000 genomes]
rs2390839	0.86[AFR][1000 genomes]
rs2390841	1.00[AFR][1000 genomes]
rs2893131	0.86[AFR][1000 genomes]
rs4834047	0.86[AFR][1000 genomes]
rs6534480	0.86[AFR][1000 genomes]
rs6534484	0.86[AFR][1000 genomes]
rs6814158	0.86[AFR][1000 genomes]
rs7668690	0.86[AFR][1000 genomes]
rs988315	0.86[AFR][1000 genomes]
rs9968423	0.86[AFR][1000 genomes]
rs9995153	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126401400-126426000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:126412400-126421800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:126413000-126422000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:126418200-126422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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