Variant report

Variant	rs1507335
Chromosome Location	chr1:209548620-209548621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209547762..209552825-chr1:209601391..209605097,6	MCF-7	breast:
2	chr1:209547752..209549329-chr1:209603815..209605769,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1006316	0.86[LWK][hapmap];0.82[MKK][hapmap];0.94[YRI][hapmap]
rs1354853	0.86[LWK][hapmap];0.80[MKK][hapmap];0.94[YRI][hapmap]
rs17014370	0.83[YRI][hapmap]
rs17014375	0.89[YRI][hapmap]
rs74155474	0.83[AMR][1000 genomes]
rs74155479	0.83[AMR][1000 genomes]
rs74155480	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209535800-209550800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:209540400-209549200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:209542400-209548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:209542600-209549200	Weak transcription	A549	lung
5	chr1:209543200-209548800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:209544000-209549000	Weak transcription	Fetal Lung	lung
7	chr1:209544400-209550200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:209545600-209548800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:209545600-209548800	Weak transcription	Fetal Brain Male	brain
10	chr1:209546600-209552800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:209546800-209550600	Enhancers	NHEK	skin
12	chr1:209547200-209549400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:209547400-209556000	Weak transcription	Esophagus	oesophagus
14	chr1:209548000-209548800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:209548000-209550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:209548400-209548800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:209548400-209549600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:209548400-209549600	Enhancers	NHLF	lung
19	chr1:209548400-209550000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:209548400-209550000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:209548400-209550000	Enhancers	Hela-S3	cervix
22	chr1:209548400-209550000	Enhancers	Osteobl	bone
23	chr1:209548400-209550200	Enhancers	HMEC	breast
24	chr1:209548600-209549000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:209548600-209549000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:209548600-209549200	Enhancers	Fetal Brain Female	brain
27	chr1:209548600-209549400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr1:209548600-209549400	Enhancers	Fetal Muscle Leg	muscle
29	chr1:209548600-209549600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:209548600-209549600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr1:209548600-209549600	Enhancers	Fetal Kidney	kidney
32	chr1:209548600-209549800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:209548600-209549800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr1:209548600-209549800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:209548600-209549800	Enhancers	HSMM	muscle
36	chr1:209548600-209550000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr1:209548600-209550200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr1:209548600-209550200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:209548600-209550200	Enhancers	Muscle Satellite Cultured Cells	--

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