Variant report

Variant	rs74155480
Chromosome Location	chr1:209571163-209571164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209565872..209577230-chr1:209599783..209610462,26	MCF-7	breast:
2	chr1:209569453..209572722-chr1:209605259..209608097,3	MCF-7	breast:
3	chr1:209570767..209573501-chr1:209586697..209588718,2	MCF-7	breast:
4	chr1:209569255..209571972-chr1:209582000..209584014,2	MCF-7	breast:
5	chr1:209564315..209567054-chr1:209569341..209571692,2	K562	blood:
6	chr1:209562581..209564275-chr1:209570599..209572769,2	MCF-7	breast:
7	chr1:209555771..209558011-chr1:209570571..209573206,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1507335	0.83[AMR][1000 genomes]
rs55892452	0.84[AFR][1000 genomes]
rs74155479	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209561000-209571400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:209563200-209571400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:209563200-209572800	Weak transcription	Esophagus	oesophagus
4	chr1:209563600-209571200	Weak transcription	HSMM	muscle
5	chr1:209563600-209571400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:209563600-209571600	Weak transcription	NH-A	brain
7	chr1:209565800-209571600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:209566000-209571200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:209566200-209571400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:209566400-209571200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:209567200-209584600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:209567400-209571200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:209567400-209575600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:209567800-209571800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:209568400-209578200	Enhancers	HMEC	breast
16	chr1:209569000-209571400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:209569000-209571400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:209569000-209571400	Weak transcription	Brain Substantia Nigra	brain
19	chr1:209569000-209571600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:209569000-209571800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:209569200-209571200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:209569200-209571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:209569200-209571400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:209569200-209571400	Weak transcription	NHLF	lung
25	chr1:209569200-209571600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:209569600-209571200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:209569600-209571400	Weak transcription	A549	lung
28	chr1:209569800-209571600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr1:209569800-209573400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:209570000-209573000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:209570000-209574400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:209570200-209571200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:209570200-209571200	Weak transcription	Lung	lung
34	chr1:209570200-209573000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr1:209570200-209574200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:209570400-209572600	Enhancers	Colon Smooth Muscle	Colon
37	chr1:209570400-209573000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr1:209570400-209573000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:209570400-209573400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr1:209570600-209571600	Enhancers	Hela-S3	cervix
41	chr1:209570600-209572600	Enhancers	Rectal Smooth Muscle	rectum
42	chr1:209570600-209572800	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:209570800-209572800	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:209571000-209571800	Enhancers	Osteobl	bone
45	chr1:209571000-209572000	Flanking Active TSS	NHEK	skin
46	chr1:209571000-209572200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:209571000-209572600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr1:209571000-209572800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr1:209571000-209573000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:209571000-209573200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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