Variant report

Variant	rs1507492
Chromosome Location	chr4:148025013-148025014
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11722430	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11735165	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11736076	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513375	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4309820	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4543091	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839893	0.90[ASN][1000 genomes]
rs6844319	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148022800-148026400	Enhancers	NHLF	lung
2	chr4:148023800-148027600	Enhancers	Adipose Nuclei	Adipose
3	chr4:148024200-148025200	Enhancers	Fetal Lung	lung
4	chr4:148024400-148025200	Enhancers	Fetal Muscle Leg	muscle
5	chr4:148024400-148025200	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr4:148024400-148025400	Enhancers	Hela-S3	cervix
7	chr4:148024400-148025600	Enhancers	Fetal Heart	heart
8	chr4:148024400-148026200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:148024400-148026400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:148024400-148026400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:148024600-148025200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:148024600-148025400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:148024600-148025400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:148024800-148025200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:148024800-148026000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:148024800-148026000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:148024800-148026000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:148024800-148026000	Enhancers	Osteobl	bone
19	chr4:148024800-148026200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:148024800-148026200	Enhancers	HSMM	muscle
21	chr4:148024800-148026400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:148024800-148026400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:148024800-148026400	Enhancers	HSMMtube	muscle
24	chr4:148024800-148026600	Enhancers	NH-A	brain
25	chr4:148024800-148026800	Enhancers	NHDF-Ad	bronchial
26	chr4:148025000-148025800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:148025000-148026000	Weak transcription	Fetal Stomach	stomach
28	chr4:148025000-148026000	Weak transcription	Left Ventricle	heart
29	chr4:148025000-148026000	Weak transcription	Psoas Muscle	Psoas
30	chr4:148025000-148026200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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