Variant report

Variant	rs6839893
Chromosome Location	chr4:148024224-148024225
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11722430	0.89[ASN][1000 genomes]
rs11735165	0.91[ASN][1000 genomes]
rs11736076	0.89[ASN][1000 genomes]
rs12513375	0.91[ASN][1000 genomes]
rs13121954	0.84[AMR][1000 genomes]
rs13145368	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1507492	0.90[ASN][1000 genomes]
rs4309820	0.90[ASN][1000 genomes]
rs4543091	0.91[ASN][1000 genomes]
rs6844319	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148020800-148024600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:148022600-148024400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:148022600-148024400	Enhancers	NHDF-Ad	bronchial
4	chr4:148022600-148024600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:148022800-148024400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:148022800-148026400	Enhancers	NHLF	lung
7	chr4:148023000-148024400	Enhancers	HSMMtube	muscle
8	chr4:148023000-148024600	Weak transcription	Ovary	ovary
9	chr4:148023200-148024400	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:148023200-148024600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:148023200-148024600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:148023400-148024400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:148023400-148024400	Weak transcription	Left Ventricle	heart
14	chr4:148023800-148024400	Enhancers	HSMM	muscle
15	chr4:148023800-148027600	Enhancers	Adipose Nuclei	Adipose
16	chr4:148024000-148024400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:148024000-148024400	Enhancers	NH-A	brain
18	chr4:148024200-148024400	Enhancers	Stomach Smooth Muscle	stomach
19	chr4:148024200-148024400	Enhancers	Osteobl	bone
20	chr4:148024200-148024800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:148024200-148024800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr4:148024200-148025200	Enhancers	Fetal Lung	lung

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