Variant report

Variant	rs150786
Chromosome Location	chr14:79360094-79360095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs154318	0.95[CHB][hapmap]
rs17108313	0.94[CHB][hapmap]
rs215507	0.91[CHB][hapmap]
rs31354	0.81[ASN][1000 genomes]
rs31356	0.81[ASN][1000 genomes]
rs31382	0.80[ASN][1000 genomes]
rs31397	0.95[CHB][hapmap]
rs8007270	0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79358400-79360200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr14:79358400-79360400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:79358600-79360200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:79358600-79364800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:79359400-79364600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:79359400-79365200	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:79359600-79364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:79360000-79360400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr14:79360000-79364200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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