Variant report

Variant	rs8007270
Chromosome Location	chr14:79315596-79315597
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11374020	0.82[EUR][1000 genomes]
rs150786	0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.80[ASN][1000 genomes]
rs154300	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154310	0.86[GIH][hapmap]
rs154318	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs17108313	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs215507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs215509	1.00[CEU][hapmap]
rs31354	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs31356	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs31382	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs31397	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs42568	0.86[GIH][hapmap]
rs749919	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79310600-79315600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr14:79314000-79317000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:79314200-79317800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:79314200-79317800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:79314400-79315600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:79314400-79316800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr14:79314400-79317800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:79314600-79316400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:79314600-79317800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:79314600-79318200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:79314800-79317800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:79314800-79318000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:79315400-79316600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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