Variant report

Variant	rs749919
Chromosome Location	chr14:79315795-79315796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1509151	1.00[CEU][hapmap]
rs154299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs154310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154314	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs17108301	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17108303	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17108324	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs215505	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs31355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs31357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs31361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs31363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs31393	1.00[CEU][hapmap]
rs31394	1.00[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs31396	1.00[CEU][hapmap]
rs39893	1.00[CEU][hapmap]
rs42568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007270	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79314000-79317000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:79314200-79317800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:79314200-79317800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:79314400-79316800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr14:79314400-79317800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr14:79314600-79316400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:79314600-79317800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:79314600-79318200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:79314800-79317800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:79314800-79318000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:79315400-79316600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr14:79315600-79315800	Enhancers	Fetal Brain Male	brain
13	chr14:79315600-79316200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:79315600-79316800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:79315600-79318000	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links