Variant report

Variant	rs17108324
Chromosome Location	chr14:79339974-79339975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10148547	1.00[CEU][hapmap]
rs12434075	1.00[CEU][hapmap]
rs154299	0.93[CHB][hapmap]
rs154310	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs154314	0.86[CHB][hapmap]
rs17108301	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs17108303	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1863028	1.00[CEU][hapmap]
rs215505	0.83[ASN][1000 genomes]
rs31357	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs31361	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs31363	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs31393	0.86[CHB][hapmap]
rs31394	0.86[CHB][hapmap]
rs31395	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs31396	0.86[CHB][hapmap]
rs39893	0.86[CHB][hapmap]
rs42568	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs749919	0.93[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79335600-79341400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:79337400-79342400	Weak transcription	Fetal Brain Female	brain
3	chr14:79338400-79341000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:79339400-79341000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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