Variant report

Variant	rs31396
Chromosome Location	chr14:79355306-79355307
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1509151	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs154299	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs154310	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs154314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17108324	0.86[CHB][hapmap]
rs31357	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs31361	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs31363	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[AMR][1000 genomes]
rs31393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs31394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs31395	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs39893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs42568	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs60924894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067145	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs749919	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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