Variant report

Variant	rs17108303
Chromosome Location	chr14:79305093-79305094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10148547	1.00[CEU][hapmap]
rs12434075	1.00[CEU][hapmap]
rs154299	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs154310	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs17108301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108324	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1863028	1.00[CEU][hapmap]
rs215505	1.00[ASN][1000 genomes]
rs31355	0.85[ASN][1000 genomes]
rs31357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs31361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs31363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs31395	1.00[CEU][hapmap];0.82[MEX][hapmap]
rs42568	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs749919	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17108303	SCGN	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79305000-79305800	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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