Variant report

Variant	rs1509692
Chromosome Location	chr1:239228114-239228115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10925808	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10925814	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10925818	0.82[EUR][1000 genomes]
rs1156168	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080823	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12084592	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092103	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143249	1.00[EUR][1000 genomes]
rs1543015	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1543016	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1543017	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1588359	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1588360	0.82[EUR][1000 genomes]
rs1605885	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2136520	0.98[ASN][1000 genomes]
rs2175168	1.00[ASN][1000 genomes]
rs2202901	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202902	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202903	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2353430	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2353431	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35597969	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61834577	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834579	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61834580	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6429125	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6429126	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6677311	1.00[ASN][1000 genomes]
rs6682504	1.00[ASN][1000 genomes]
rs7416262	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525377	0.98[ASN][1000 genomes]
rs7540689	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7545552	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7552074	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7554420	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs989217	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873348	chr1:239023492-239356155	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv998542	chr1:239102274-239424608	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1002301	chr1:239182255-239774393	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:239225600-239229800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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