Variant report

Variant	rs61834577
Chromosome Location	chr1:239227249-239227250
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10925808	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10925814	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1156168	0.89[ASN][1000 genomes]
rs12084592	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12092103	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12143249	0.81[EUR][1000 genomes]
rs1509692	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2136520	0.87[ASN][1000 genomes]
rs2175168	0.89[ASN][1000 genomes]
rs2202901	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2202902	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2202903	0.89[ASN][1000 genomes]
rs61834579	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61834580	0.89[ASN][1000 genomes]
rs6677311	0.89[ASN][1000 genomes]
rs6682504	0.89[ASN][1000 genomes]
rs7416262	0.89[ASN][1000 genomes]
rs7525377	0.90[ASN][1000 genomes]
rs7545552	0.85[ASN][1000 genomes]
rs989217	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873348	chr1:239023492-239356155	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv998542	chr1:239102274-239424608	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1002301	chr1:239182255-239774393	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:239225600-239229800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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