Variant report

Variant	rs1511072
Chromosome Location	chr6:165269709-165269710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1511069	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1511070	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1511071	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2063427	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063428	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34309175	0.82[ASN][1000 genomes]
rs4506023	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4569942	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4639310	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6455968	0.86[ASN][1000 genomes]
rs6902206	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7356835	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7356875	0.80[EUR][1000 genomes]
rs7768607	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9347936	0.81[ASN][1000 genomes]
rs9365797	0.81[ASN][1000 genomes]
rs9459215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830862	chr6:165132822-165311086	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv11557	chr6:165269422-165273754	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165269200-165270000	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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