Variant report

Variant	rs1511200
Chromosome Location	chr2:167798103-167798104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11884668	0.93[ASW][hapmap];0.91[CHB][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap]
rs1355415	0.85[ASW][hapmap]
rs1397700	0.91[CHB][hapmap]
rs1397701	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs1511210	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1511211	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap]
rs1567534	0.85[ASW][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap]
rs7564737	1.00[ASW][hapmap];0.86[CHB][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1511200	BIRC8	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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