Variant report

Variant	rs1397701
Chromosome Location	chr2:167781468-167781469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10497305	1.00[CEU][hapmap]
rs11884668	0.82[CHB][hapmap]
rs1397700	0.83[CHB][hapmap]
rs1511200	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs1511210	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs1511211	0.82[CHB][hapmap]
rs1567534	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs16852817	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16852842	0.87[CEU][hapmap]
rs16852862	0.87[CEU][hapmap]
rs16852864	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16852870	0.87[CEU][hapmap]
rs1949107	1.00[CEU][hapmap]
rs58766744	0.84[EUR][1000 genomes]
rs6715263	1.00[CEU][hapmap]
rs73024322	0.83[ASN][1000 genomes]
rs7584912	0.87[CEU][hapmap]
rs869000	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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