Variant report
| Variant | rs1949107 |
|---|---|
| Chromosome Location | chr2:167864895-167864896 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:167859522..167861996-chr2:167862862..167865085,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10497305 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1397701 | 1.00[CEU][hapmap] |
| rs16852817 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs16852842 | 0.85[CEU][hapmap] |
| rs16852862 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap] |
| rs16852863 | 0.82[AMR][1000 genomes] |
| rs16852864 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16852870 | 0.85[CEU][hapmap] |
| rs58766744 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6715263 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap] |
| rs7584912 | 0.85[CEU][hapmap] |
| rs869000 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529384 | chr2:167143465-167958752 | Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv508177 | chr2:167840473-167871677 | Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv3019 | chr2:167843982-167870745 | Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv875376 | chr2:167844513-168037489 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv963935 | chr2:167863774-167877239 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
