Variant report

Variant	rs16852817
Chromosome Location	chr2:167827932-167827933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10497305	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap]
rs1397701	1.00[CEU][hapmap]
rs16852842	0.87[CEU][hapmap];0.93[MEX][hapmap]
rs16852862	0.87[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs16852864	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16852870	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs1877191	0.87[CEU][hapmap]
rs1949107	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs58766744	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6715263	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap]
rs7584912	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs7596345	0.87[CEU][hapmap]
rs869000	0.87[CEU][hapmap];0.93[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167823600-167828400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:167826800-167828200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:167827000-167828200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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