Variant report

Variant	rs1511377
Chromosome Location	chr3:140980454-140980455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140979092..140980745-chr3:141007999..141010139,2	K562	blood:
2	chr3:140975814..140978503-chr3:140979443..140982221,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241400	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11715472	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1877219	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2311734	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4683398	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4683588	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4683592	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6439990	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6439993	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803826	0.84[AMR][1000 genomes]
rs899349	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9289627	0.91[EUR][1000 genomes]
rs9841326	0.84[AMR][1000 genomes]
rs9878866	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140955200-140980600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:140955400-140985800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:140957400-141001000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:140959200-140998400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:140961200-140985800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
7	chr3:140961400-140983200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:140962000-140985800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:140962600-140980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:140963400-140982800	Weak transcription	Brain Germinal Matrix	brain
11	chr3:140966000-140990200	Weak transcription	Psoas Muscle	Psoas
12	chr3:140968200-140990000	Weak transcription	Gastric	stomach
13	chr3:140968400-140982800	Weak transcription	Fetal Lung	lung
14	chr3:140974800-140985800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:140974800-140987400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:140974800-140991400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:140975000-140984800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:140975000-140985800	Weak transcription	Right Atrium	heart
19	chr3:140975000-140993400	Weak transcription	Lung	lung
20	chr3:140975000-140993400	Weak transcription	Spleen	Spleen
21	chr3:140975200-140980600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:140975200-140984400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr3:140975200-140984800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:140975200-140985000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:140975200-140991800	Weak transcription	Placenta	Placenta
26	chr3:140975400-140980600	Weak transcription	HSMM	muscle
27	chr3:140975400-140983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr3:140975400-140990200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:140975800-140983600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:140975800-140993200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:140976000-140983600	Weak transcription	Fetal Brain Female	brain
32	chr3:140976400-140987200	Weak transcription	Fetal Brain Male	brain
33	chr3:140976600-140985800	Weak transcription	Fetal Heart	heart
34	chr3:140977200-140985200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:140977800-140983200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr3:140977800-140990000	Weak transcription	Liver	Liver
37	chr3:140978000-140985600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:140978000-140998000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:140978200-140993600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:140978800-140980600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:140978800-140986200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr3:140978800-140988000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:140978800-140993000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:140979000-140980600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr3:140979000-140981000	Strong transcription	Fetal Intestine Small	intestine
46	chr3:140979000-140981000	Strong transcription	Fetal Stomach	stomach
47	chr3:140979000-140981000	Genic enhancers	Fetal Thymus	thymus
48	chr3:140979000-140981000	Strong transcription	Right Ventricle	heart
49	chr3:140979000-140981400	Strong transcription	Fetal Muscle Leg	muscle
50	chr3:140979000-140981400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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