Variant report

Variant	rs9841326
Chromosome Location	chr3:140994629-140994630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140994584..140997206-chr3:140998045..141000417,2	K562	blood:
2	chr3:140949328..140952346-chr3:140991131..140995521,4	MCF-7	breast:
3	chr3:140984792..140987604-chr3:140994461..140996447,2	K562	blood:

Variant related genes	Relation type
ENSG00000155893	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11715472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1511376	0.82[CEU][hapmap]
rs1511377	0.84[AMR][1000 genomes]
rs1511378	0.82[CEU][hapmap]
rs1877219	0.88[CEU][hapmap]
rs1993904	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2311734	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4683398	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4683588	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs4683592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6439990	0.82[CEU][hapmap]
rs6439993	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs6439995	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6803258	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6803826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899349	0.82[AMR][1000 genomes]
rs9289627	0.88[CEU][hapmap]
rs9878866	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9880195	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv3336617	chr3:140992062-140995160	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140957400-141001000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:140959200-140998400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
4	chr3:140978000-140998000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:140979000-141000800	Weak transcription	Fetal Kidney	kidney
6	chr3:140979000-141013200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:140980800-141005600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:140981000-140998400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:140981200-141013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:140981200-141013400	Weak transcription	Colonic Mucosa	Colon
11	chr3:140981400-141001000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:140983600-141021600	Weak transcription	Esophagus	oesophagus
13	chr3:140984000-140997400	Weak transcription	Fetal Brain Female	brain
14	chr3:140984200-141000800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:140984600-140997600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:140984800-141006400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:140986200-140997600	Weak transcription	Brain Anterior Caudate	brain
18	chr3:140986200-140997600	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:140986200-140997600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:140986200-140998000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:140986200-141000800	Weak transcription	Fetal Lung	lung
22	chr3:140986800-140997400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr3:140987200-140997400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:140987800-140997600	Weak transcription	HSMMtube	muscle
25	chr3:140988200-141022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:140988400-141001800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:140990800-140998600	Weak transcription	Gastric	stomach
28	chr3:140991000-140996400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:140991000-140996800	Weak transcription	Fetal Intestine Large	intestine
30	chr3:140991000-140997400	Weak transcription	Right Atrium	heart
31	chr3:140991000-140997800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:140991000-140999600	Weak transcription	Pancreas	Pancrea
33	chr3:140991800-140996800	Enhancers	Placenta	Placenta
34	chr3:140992200-140997600	Weak transcription	Brain Angular Gyrus	brain
35	chr3:140992600-140995200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:140992800-140995600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:140992800-140995600	Enhancers	HMEC	breast
38	chr3:140992800-140995600	Enhancers	NHEK	skin
39	chr3:140993000-140995200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:140993000-140995200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:140993200-141014200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:140993400-140994800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:140993400-140995600	Enhancers	Hela-S3	cervix
44	chr3:140993400-140997200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:140993400-140998400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:140993600-140995600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:140993600-140995600	Enhancers	Muscle Satellite Cultured Cells	--
48	chr3:140993600-140997600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:140993600-141004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:140993800-140995400	Enhancers	HepG2	liver

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