Variant report

Variant	rs151240915
Chromosome Location	chr6:1833008-1833009
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:1641276..1642150-chr6:1832654..1833597,12	MCF-7	breast:
2	chr6:1831250..1835471-chr6:1835503..1841068,8	MCF-7	breast:
3	chr6:1829103..1830910-chr6:1832147..1834124,2	MCF-7	breast:
4	chr6:1767654..1768676-chr6:1832751..1833553,3	MCF-7	breast:
5	chr6:1641276..1642209-chr6:1832654..1833597,16	MCF-7	breast:
6	chr6:1641227..1642195-chr6:1832847..1833566,5	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv491607	chr6:1580681-1951526	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1020603	chr6:1697548-1921374	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538093	chr6:1697548-1921374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869043	chr6:1744238-2006788	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538094	chr6:1757776-1907505	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
9	nsv883383	chr6:1775436-1918572	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv883384	chr6:1787862-1942538	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1019895	chr6:1832936-1882435	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1799400-1833200	Weak transcription	Gastric	stomach
2	chr6:1822600-1837600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:1829400-1837800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:1829800-1856600	Weak transcription	Primary T cells from cord blood	blood
5	chr6:1830000-1833600	Weak transcription	Colonic Mucosa	Colon
6	chr6:1831800-1838000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:1832400-1833200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:1832400-1833600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:1832400-1834000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:1832600-1833200	Flanking Active TSS	Fetal Kidney	kidney
11	chr6:1832600-1833800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:1832600-1833800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:1832800-1833200	Enhancers	NHLF	lung
14	chr6:1832800-1833400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:1832800-1833400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:1832800-1833400	Enhancers	Brain Germinal Matrix	brain
17	chr6:1832800-1833400	Active TSS	Brain Hippocampus Middle	brain
18	chr6:1832800-1833400	Enhancers	Brain Substantia Nigra	brain
19	chr6:1832800-1833400	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr6:1832800-1833400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
21	chr6:1832800-1833400	Flanking Active TSS	HUVEC	blood vessel
22	chr6:1832800-1833600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:1832800-1833600	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr6:1832800-1833600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr6:1832800-1833600	Enhancers	Duodenum Mucosa	Duodenum
26	chr6:1832800-1833600	Enhancers	Rectal Smooth Muscle	rectum
27	chr6:1832800-1833600	Enhancers	Stomach Mucosa	stomach
28	chr6:1832800-1833600	Active TSS	Stomach Smooth Muscle	stomach
29	chr6:1832800-1833600	Enhancers	NHDF-Ad	bronchial
30	chr6:1832800-1833800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:1832800-1833800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:1832800-1833800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:1832800-1833800	Enhancers	NH-A	brain
34	chr6:1832800-1834000	Enhancers	Colon Smooth Muscle	Colon
35	chr6:1832800-1834000	Enhancers	HepG2	liver
36	chr6:1832800-1834200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:1832800-1834200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:1832800-1835200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr6:1832800-1835200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:1833000-1833200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr6:1833000-1833200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:1833000-1833200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:1833000-1833200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:1833000-1833200	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr6:1833000-1833200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:1833000-1833200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr6:1833000-1833200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
48	chr6:1833000-1833200	Flanking Active TSS	Right Atrium	heart
49	chr6:1833000-1833200	Flanking Active TSS	Osteobl	bone
50	chr6:1833000-1833400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links