Variant report

Variant	rs1512923
Chromosome Location	chr3:86225249-86225250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4630950	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6804549	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7340540	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9851113	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86222600-86225600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:86222600-86226000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:86222600-86226000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:86222600-86226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:86222600-86226400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:86223200-86226200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:86223400-86226400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:86223600-86226200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:86224000-86225400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:86224000-86225400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:86224200-86225400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:86224400-86225600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:86224600-86225800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr3:86224600-86226000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:86225000-86225400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr3:86225000-86226400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr3:86225200-86225600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr3:86225200-86226200	Weak transcription	Fetal Kidney	kidney
19	chr3:86225200-86226400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:86225200-86226600	Enhancers	HUES48 Cell Line	embryonic stem cell

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