Variant report

Variant	rs7340540
Chromosome Location	chr3:86222710-86222711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13319689	0.93[CHB][hapmap]
rs1512923	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4443171	0.93[CHB][hapmap]
rs4630950	0.85[AMR][1000 genomes]
rs6804549	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7427816	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9851113	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9880964	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86220000-86224000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:86222600-86222800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:86222600-86223800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr3:86222600-86224200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:86222600-86224600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:86222600-86224600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:86222600-86225200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:86222600-86225600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:86222600-86226000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:86222600-86226000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:86222600-86226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:86222600-86226400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links