Variant report

Variant	rs1513323
Chromosome Location	chr3:111286119-111286120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10511298	0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11916952	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1391356	1.00[JPT][hapmap]
rs1497990	1.00[JPT][hapmap]
rs1603687	0.91[ASN][1000 genomes]
rs2088468	0.90[ASN][1000 genomes]
rs2399393	0.83[ASN][1000 genomes]
rs6764960	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6788797	0.91[ASN][1000 genomes]
rs721336	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7616420	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7619086	1.00[JPT][hapmap]
rs7628039	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs7628253	0.91[ASN][1000 genomes]
rs883113	0.88[ASN][1000 genomes]
rs924262	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs968910	0.86[JPT][hapmap]
rs9865195	0.95[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111269800-111289200	Weak transcription	Thymus	Thymus
2	chr3:111271600-111286200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:111271600-111286600	Weak transcription	Fetal Thymus	thymus
4	chr3:111282000-111286200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:111282000-111286400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:111283400-111286400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:111283400-111286600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:111283600-111286400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:111284000-111288200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:111285000-111289600	Strong transcription	Dnd41	blood
11	chr3:111285200-111287000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:111285600-111286400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:111285800-111286200	Genic enhancers	Primary T cells from cord blood	blood
14	chr3:111285800-111286400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:111285800-111286800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:111285800-111287000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:111286000-111286400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:111286000-111286800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:111286000-111288400	Strong transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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