Variant report

Variant	rs9865195
Chromosome Location	chr3:111291946-111291947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10511299	0.82[JPT][hapmap]
rs1513323	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2173318	0.82[JPT][hapmap]
rs2276873	0.84[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4682049	0.82[JPT][hapmap]
rs6792149	0.83[ASN][1000 genomes]
rs721336	1.00[CEU][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7628039	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653347	0.84[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111286400-111293200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:111287800-111293000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:111288400-111296000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:111288600-111296600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:111289400-111292200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:111289600-111292000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:111290000-111294200	Strong transcription	Dnd41	blood
8	chr3:111290000-111295000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:111290000-111297200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:111291000-111294000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:111291000-111294200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:111291000-111295800	Weak transcription	Fetal Thymus	thymus
13	chr3:111291000-111297000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:111291000-111297200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr3:111291200-111292400	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr3:111291200-111292800	Weak transcription	Primary T cells from cord blood	blood
17	chr3:111291200-111295800	Weak transcription	Thymus	Thymus
18	chr3:111291800-111292000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:111291800-111298000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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