Variant report

Variant	rs1514301
Chromosome Location	chr4:128455042-128455043
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:128449129..128451520-chr4:128453107..128455386,2	K562	blood:
2	chr4:128375252..128378171-chr4:128454899..128457356,2	K562	blood:
3	chr4:128449705..128452234-chr4:128453227..128455144,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10025576	0.82[EUR][1000 genomes]
rs11098924	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737101	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11937218	0.84[ASN][1000 genomes]
rs12499018	0.84[ASN][1000 genomes]
rs12502458	0.83[ASN][1000 genomes]
rs12505574	0.84[ASN][1000 genomes]
rs12506317	0.84[ASN][1000 genomes]
rs12508021	0.83[ASN][1000 genomes]
rs12513002	0.84[ASN][1000 genomes]
rs12513073	0.84[ASN][1000 genomes]
rs12513077	0.84[ASN][1000 genomes]
rs12641215	0.88[ASN][1000 genomes]
rs13136353	0.89[ASN][1000 genomes]
rs13145532	0.81[EUR][1000 genomes]
rs13147738	0.92[ASN][1000 genomes]
rs1355924	0.80[EUR][1000 genomes]
rs1399215	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514300	0.82[EUR][1000 genomes]
rs1514303	0.95[ASN][1000 genomes]
rs1514304	0.91[ASN][1000 genomes]
rs1514306	0.92[ASN][1000 genomes]
rs1514307	0.92[ASN][1000 genomes]
rs1514308	0.89[ASN][1000 genomes]
rs1514309	0.89[ASN][1000 genomes]
rs17012484	0.83[ASN][1000 genomes]
rs17012500	0.84[ASN][1000 genomes]
rs17012503	0.83[ASN][1000 genomes]
rs1913463	0.91[ASN][1000 genomes]
rs2002543	0.90[CEU][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2090103	0.84[CEU][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2203374	0.80[EUR][1000 genomes]
rs56077955	0.84[ASN][1000 genomes]
rs57872398	0.82[ASN][1000 genomes]
rs59695248	0.83[ASN][1000 genomes]
rs61143634	0.84[ASN][1000 genomes]
rs6815196	0.90[CEU][hapmap]
rs6817525	0.89[ASN][1000 genomes]
rs6817788	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6851269	0.91[ASN][1000 genomes]
rs72621859	0.84[ASN][1000 genomes]
rs72621860	0.84[ASN][1000 genomes]
rs72621861	0.84[ASN][1000 genomes]
rs72621862	0.84[ASN][1000 genomes]
rs7435603	0.83[ASN][1000 genomes]
rs7653949	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs972329	0.86[EUR][1000 genomes]
rs979051	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1029214	chr4:128292215-128683123	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537247	chr4:128292215-128683123	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817326	chr4:128292216-128915201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1015564	chr4:128394657-128506962	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017325	chr4:128408370-128509276	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv595387	chr4:128410916-128523964	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879916	chr4:128422400-128694288	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128453800-128455400	Enhancers	Fetal Lung	lung
2	chr4:128454600-128459800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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