Variant report

Variant	rs979051
Chromosome Location	chr4:128431137-128431138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10025576	0.91[EUR][1000 genomes]
rs11098924	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098926	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11737101	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11737108	0.84[EUR][1000 genomes]
rs11937218	0.82[ASN][1000 genomes]
rs12499018	0.82[ASN][1000 genomes]
rs12502458	0.83[ASN][1000 genomes]
rs12505574	0.82[ASN][1000 genomes]
rs12506317	0.82[ASN][1000 genomes]
rs12508021	0.83[ASN][1000 genomes]
rs12513002	0.82[ASN][1000 genomes]
rs12513073	0.82[ASN][1000 genomes]
rs12513077	0.82[ASN][1000 genomes]
rs12641215	0.92[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs12644377	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs13136353	0.91[ASN][1000 genomes]
rs13145532	0.92[EUR][1000 genomes]
rs13147738	0.94[ASN][1000 genomes]
rs1355924	0.92[EUR][1000 genomes]
rs1399215	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1514300	0.90[EUR][1000 genomes]
rs1514301	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1514303	0.98[ASN][1000 genomes]
rs1514304	0.94[ASN][1000 genomes]
rs1514306	0.94[ASN][1000 genomes]
rs1514307	0.94[ASN][1000 genomes]
rs1514308	0.91[ASN][1000 genomes]
rs1514309	0.91[ASN][1000 genomes]
rs17012484	0.83[ASN][1000 genomes]
rs17012500	0.82[ASN][1000 genomes]
rs17012503	0.80[ASN][1000 genomes]
rs1913463	0.93[ASN][1000 genomes]
rs2002543	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007243	0.94[JPT][hapmap]
rs2090103	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2203374	0.92[EUR][1000 genomes]
rs4833378	0.90[EUR][1000 genomes]
rs56077955	0.82[ASN][1000 genomes]
rs57872398	0.84[ASN][1000 genomes]
rs59695248	0.83[ASN][1000 genomes]
rs61143634	0.82[ASN][1000 genomes]
rs6815196	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs6817525	0.91[ASN][1000 genomes]
rs6817788	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6851269	0.93[ASN][1000 genomes]
rs72621859	0.82[ASN][1000 genomes]
rs72621860	0.82[ASN][1000 genomes]
rs72621861	0.82[ASN][1000 genomes]
rs72621862	0.82[ASN][1000 genomes]
rs7435603	0.83[ASN][1000 genomes]
rs7439365	0.89[JPT][hapmap]
rs7653949	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908009	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs972329	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1029214	chr4:128292215-128683123	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537247	chr4:128292215-128683123	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817326	chr4:128292216-128915201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1015564	chr4:128394657-128506962	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017325	chr4:128408370-128509276	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv595387	chr4:128410916-128523964	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879916	chr4:128422400-128694288	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128424800-128438400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:128428400-128431600	Weak transcription	Fetal Heart	heart
3	chr4:128430600-128431200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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