Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11619462	0.93[ASN][1000 genomes]
rs12871609	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1399309	0.83[AFR][1000 genomes]
rs1877834	0.95[ASN][1000 genomes]
rs3106594	0.95[AFR][1000 genomes]
rs3121787	0.94[AFR][1000 genomes]
rs3121788	0.94[AFR][1000 genomes]
rs3121794	0.82[AFR][1000 genomes]
rs55760497	0.82[EUR][1000 genomes]
rs6562152	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562153	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562154	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7981673	0.95[ASN][1000 genomes]
rs7990637	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9539033	0.96[AFR][1000 genomes]
rs9570442	0.91[EUR][1000 genomes]
rs9570445	0.99[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs981853	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981854	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983220	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61652800-61654200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:61652800-61654200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:61652800-61654200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:61652800-61654600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr13:61653000-61654400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:61654000-61654200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:61654000-61657000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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