Variant report

Variant	rs3121788
Chromosome Location	chr13:61658486-61658487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12858597	0.95[ASN][1000 genomes]
rs1399315	0.87[AMR][1000 genomes]
rs1514542	0.94[AFR][1000 genomes]
rs3106594	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106605	0.87[AMR][1000 genomes]
rs3121787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3121790	0.97[ASN][1000 genomes]
rs3121794	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325636	0.93[ASN][1000 genomes]
rs9317158	0.97[ASN][1000 genomes]
rs9539018	0.84[ASN][1000 genomes]
rs9539020	0.93[ASN][1000 genomes]
rs9539033	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9570445	0.95[AFR][1000 genomes]
rs9570447	0.97[ASN][1000 genomes]
rs9598231	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61654200-61659200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr13:61654600-61663800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:61655200-61662000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:61656600-61659600	Weak transcription	Brain Germinal Matrix	brain
5	chr13:61657000-61661000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:61658200-61660800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:61658200-61661000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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