Variant report

Variant	rs9317158
Chromosome Location	chr13:61654302-61654303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12858597	0.93[ASN][1000 genomes]
rs3106594	0.97[ASN][1000 genomes]
rs3121787	0.97[ASN][1000 genomes]
rs3121788	0.97[ASN][1000 genomes]
rs3121790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3121794	0.97[ASN][1000 genomes]
rs7325636	0.91[ASN][1000 genomes]
rs9539018	0.82[ASN][1000 genomes]
rs9539020	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9539033	0.95[ASN][1000 genomes]
rs9570447	0.99[ASN][1000 genomes]
rs9598231	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61652800-61654600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr13:61653000-61654400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:61654000-61657000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:61654200-61654600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:61654200-61659200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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