Variant report

Variant	rs9539018
Chromosome Location	chr13:61634379-61634380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12858597	0.87[ASN][1000 genomes]
rs3106594	0.84[ASN][1000 genomes]
rs3121787	0.84[ASN][1000 genomes]
rs3121788	0.84[ASN][1000 genomes]
rs3121790	0.82[ASN][1000 genomes]
rs3121794	0.84[ASN][1000 genomes]
rs7325636	0.85[ASN][1000 genomes]
rs9317158	0.82[ASN][1000 genomes]
rs9539020	0.85[ASN][1000 genomes]
rs9539033	0.85[ASN][1000 genomes]
rs9570447	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv61693	chr13:61634378-61634381	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61622400-61642000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61634000-61638800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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