Variant report

Variant	rs12858597
Chromosome Location	chr13:61632279-61632280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3106594	0.95[ASN][1000 genomes]
rs3121787	0.95[ASN][1000 genomes]
rs3121788	0.95[ASN][1000 genomes]
rs3121790	0.93[ASN][1000 genomes]
rs3121794	0.95[ASN][1000 genomes]
rs7325636	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9317158	0.93[ASN][1000 genomes]
rs9539018	0.87[ASN][1000 genomes]
rs9539020	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9539033	0.97[ASN][1000 genomes]
rs9570447	0.92[ASN][1000 genomes]
rs9598231	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61622400-61642000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61631800-61633400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:61631800-61633600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:61632000-61633000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:61632000-61633400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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