Variant report
| Variant | rs9570447 |
|---|---|
| Chromosome Location | chr13:61651695-61651696 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11619462 | 0.93[AFR][1000 genomes] |
| rs12858597 | 0.92[ASN][1000 genomes] |
| rs12871609 | 0.91[AFR][1000 genomes] |
| rs1877834 | 0.93[AFR][1000 genomes] |
| rs3106594 | 0.97[ASN][1000 genomes] |
| rs3121787 | 0.97[ASN][1000 genomes] |
| rs3121788 | 0.97[ASN][1000 genomes] |
| rs3121790 | 0.99[ASN][1000 genomes] |
| rs3121794 | 0.97[ASN][1000 genomes] |
| rs6562152 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs6562153 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs6562154 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7325636 | 0.90[ASN][1000 genomes] |
| rs7981673 | 0.89[AFR][1000 genomes] |
| rs9317158 | 0.99[ASN][1000 genomes] |
| rs9539018 | 0.81[ASN][1000 genomes] |
| rs9539020 | 0.96[ASN][1000 genomes] |
| rs9539033 | 0.96[ASN][1000 genomes] |
| rs9598231 | 0.90[ASN][1000 genomes] |
| rs981853 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs981854 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs983220 | 0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832626 | chr13:61545191-61698233 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61649800-61652600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
