Variant report

Variant	rs9598231
Chromosome Location	chr13:61615919-61615920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12858597	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3106594	0.87[ASN][1000 genomes]
rs3121787	0.87[ASN][1000 genomes]
rs3121788	0.87[ASN][1000 genomes]
rs3121790	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3121794	0.87[ASN][1000 genomes]
rs7325636	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9317158	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9539020	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9539033	0.88[ASN][1000 genomes]
rs9570447	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832626	chr13:61545191-61698233	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61603600-61620400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:61605600-61617000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:61614800-61619400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:61615800-61616800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links