Variant report

Variant	rs1515308
Chromosome Location	chr2:180443444-180443445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16866800	1.00[ASW][hapmap];0.90[CEU][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866836	0.89[YRI][hapmap]
rs2138196	0.81[CEU][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521639	chr2:180439541-180443444	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
4	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180439400-180445000	Weak transcription	Stomach Mucosa	stomach
6	chr2:180439800-180445200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180439800-180445200	Weak transcription	Fetal Lung	lung
8	chr2:180439800-180446400	Enhancers	Liver	Liver
9	chr2:180441200-180445200	Weak transcription	Pancreas	Pancrea
10	chr2:180442400-180446800	Enhancers	HepG2	liver
11	chr2:180443000-180443600	Enhancers	Fetal Intestine Large	intestine
12	chr2:180443000-180443600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr2:180443200-180443600	Enhancers	Fetal Intestine Small	intestine
14	chr2:180443200-180443800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:180443200-180444200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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