Variant report

Variant	rs16866836
Chromosome Location	chr2:180457484-180457485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12476520	0.81[YRI][hapmap]
rs1515308	0.89[YRI][hapmap]
rs16866800	0.85[MEX][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes]
rs2138194	0.94[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes]
rs2138196	0.83[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56136499	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6707437	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180456200-180457600	Enhancers	Osteobl	bone
3	chr2:180456200-180458000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:180456400-180459400	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr2:180456600-180458400	Weak transcription	Psoas Muscle	Psoas
6	chr2:180456600-180459200	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr2:180456600-180459600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:180456800-180460400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:180457000-180458000	Enhancers	Fetal Intestine Small	intestine
10	chr2:180457200-180457600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:180457200-180457800	Enhancers	HSMM	muscle
12	chr2:180457400-180457800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:180457400-180459400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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