Variant report

Variant	rs1515688
Chromosome Location	chr8:52864460-52864461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10086425	0.96[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10087958	0.84[EUR][1000 genomes]
rs10094042	0.86[ASN][1000 genomes]
rs10105030	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1013621	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1013622	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11774370	0.96[CHB][hapmap];0.91[JPT][hapmap]
rs11781801	0.90[ASN][1000 genomes]
rs11786818	0.86[ASN][1000 genomes]
rs12335014	0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs12677168	0.81[ASN][1000 genomes]
rs13256197	0.81[ASN][1000 genomes]
rs13263909	0.85[ASN][1000 genomes]
rs13267241	0.84[ASN][1000 genomes]
rs13275077	0.81[ASN][1000 genomes]
rs13276858	0.86[ASN][1000 genomes]
rs1467197	0.86[ASN][1000 genomes]
rs1517306	0.96[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs16916858	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs2176121	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2395827	0.86[ASN][1000 genomes]
rs28619907	0.86[ASN][1000 genomes]
rs34619309	0.81[ASN][1000 genomes]
rs35293585	0.80[ASN][1000 genomes]
rs4565453	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4873611	0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs6473660	0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6473667	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6982622	0.81[ASN][1000 genomes]
rs6983708	0.81[ASN][1000 genomes]
rs6986544	0.96[CHB][hapmap];0.91[JPT][hapmap]
rs6986984	0.87[CHB][hapmap]
rs6988122	0.81[ASN][1000 genomes]
rs6993367	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7001651	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017926	0.81[ASN][1000 genomes]
rs7461587	0.90[ASN][1000 genomes]
rs7462096	0.91[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7814421	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7827298	0.84[ASN][1000 genomes]
rs7835856	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7843189	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs877248	0.84[EUR][1000 genomes]
rs925762	0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9298462	0.95[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52850200-52868000	Weak transcription	Primary B cells from cord blood	blood
2	chr8:52852000-52870000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr8:52852200-52866000	Weak transcription	Left Ventricle	heart
4	chr8:52852600-52867600	Weak transcription	Fetal Kidney	kidney
5	chr8:52852800-52867000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:52856800-52865200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:52859800-52866600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:52861200-52866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:52861200-52870000	Weak transcription	Fetal Muscle Leg	muscle

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