Variant report

Variant	rs7001651
Chromosome Location	chr8:52849413-52849414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:52848459..52850070-chr8:52855590..52857854,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10086425	0.96[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10087958	0.82[EUR][1000 genomes]
rs10094042	0.88[ASN][1000 genomes]
rs10105030	0.96[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1013621	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1013622	0.96[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs11774370	0.96[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11781801	0.92[ASN][1000 genomes]
rs11782727	0.81[ASN][1000 genomes]
rs11786818	0.89[ASN][1000 genomes]
rs12335014	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12677168	0.84[ASN][1000 genomes]
rs13256197	0.81[ASN][1000 genomes]
rs13263909	0.88[ASN][1000 genomes]
rs13267241	0.86[ASN][1000 genomes]
rs13275077	0.81[ASN][1000 genomes]
rs13276858	0.88[ASN][1000 genomes]
rs1467197	0.89[ASN][1000 genomes]
rs1515688	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1517306	0.96[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs16916858	0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs2176121	0.96[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2395826	0.82[ASN][1000 genomes]
rs2395827	0.89[ASN][1000 genomes]
rs28619907	0.89[ASN][1000 genomes]
rs34619309	0.81[ASN][1000 genomes]
rs35293585	0.81[ASN][1000 genomes]
rs4565453	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4873611	0.95[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6473660	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6473667	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6982622	0.84[ASN][1000 genomes]
rs6983708	0.84[ASN][1000 genomes]
rs6986544	0.96[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6986984	0.87[CHB][hapmap]
rs6988122	0.84[ASN][1000 genomes]
rs6993367	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7017926	0.81[ASN][1000 genomes]
rs7461587	0.92[ASN][1000 genomes]
rs7462096	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs7814421	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7827298	0.86[ASN][1000 genomes]
rs7835856	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7843189	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs877248	0.84[EUR][1000 genomes]
rs925762	0.96[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9298462	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52814200-52850000	Weak transcription	Spleen	Spleen
2	chr8:52815000-52852000	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:52822600-52860200	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:52831800-52858400	Weak transcription	Primary T cells from cord blood	blood
5	chr8:52831800-52863400	Weak transcription	Aorta	Aorta
6	chr8:52837800-52851800	Weak transcription	Ovary	ovary
7	chr8:52838000-52853400	Weak transcription	Esophagus	oesophagus
8	chr8:52841600-52852000	Weak transcription	Lung	lung
9	chr8:52842200-52851800	Weak transcription	Left Ventricle	heart
10	chr8:52842400-52850800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:52842600-52851000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:52845200-52851800	Weak transcription	Pancreas	Pancrea
13	chr8:52845400-52852800	Weak transcription	Psoas Muscle	Psoas
14	chr8:52847600-52851400	Enhancers	GM12878-XiMat	blood
15	chr8:52848000-52851600	Weak transcription	Liver	Liver
16	chr8:52849400-52850400	Enhancers	Primary B cells from peripheral blood	blood

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