Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10083669	0.80[AFR][1000 genomes]
rs1021746	0.81[EUR][1000 genomes]
rs1021747	0.80[EUR][1000 genomes]
rs10851539	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11630701	0.83[AFR][1000 genomes]
rs11635444	0.83[AFR][1000 genomes]
rs11635520	0.83[AFR][1000 genomes]
rs11635540	0.83[AFR][1000 genomes]
rs1400217	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1516408	0.85[AFR][1000 genomes]
rs1516409	0.82[AFR][1000 genomes]
rs2055404	0.83[AFR][1000 genomes]
rs2055405	0.83[AFR][1000 genomes]
rs4387548	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4776141	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4776144	0.82[EUR][1000 genomes]
rs7167273	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7167279	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7167286	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7167448	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs905034	0.81[EUR][1000 genomes]
rs972893	0.83[AFR][1000 genomes]
rs974730	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1516406	SPPL2A	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53666400-53671200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:53669200-53672600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:53669800-53670400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:53669800-53670400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:53670000-53670800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr15:53670200-53671000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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