Variant report

Variant	rs2055405
Chromosome Location	chr15:53668018-53668019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53663627..53666576-chr15:53666710..53668848,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10083669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1038552	0.83[EUR][1000 genomes]
rs1038553	0.97[EUR][1000 genomes]
rs11630701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11635444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11635520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11635540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12148424	0.95[EUR][1000 genomes]
rs12148432	0.95[EUR][1000 genomes]
rs12439644	0.93[EUR][1000 genomes]
rs1356242	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356243	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1400212	0.97[EUR][1000 genomes]
rs1400213	0.97[EUR][1000 genomes]
rs1400214	0.95[EUR][1000 genomes]
rs1400215	0.97[EUR][1000 genomes]
rs1400217	0.92[AFR][1000 genomes]
rs1501067	0.98[EUR][1000 genomes]
rs1501068	0.96[EUR][1000 genomes]
rs1516406	0.83[AFR][1000 genomes]
rs1516407	0.96[EUR][1000 genomes]
rs1516408	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1516409	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1516410	0.97[EUR][1000 genomes]
rs1516414	0.89[EUR][1000 genomes]
rs2055404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055406	0.97[EUR][1000 genomes]
rs2414233	0.98[EUR][1000 genomes]
rs4387548	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4776139	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4776140	0.94[EUR][1000 genomes]
rs4776141	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs592248	0.88[EUR][1000 genomes]
rs6493622	0.98[EUR][1000 genomes]
rs7167273	0.82[ASN][1000 genomes]
rs7167279	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7167286	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7167448	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7168732	0.95[EUR][1000 genomes]
rs7169090	0.94[EUR][1000 genomes]
rs7169159	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7169275	0.94[EUR][1000 genomes]
rs8036605	0.94[EUR][1000 genomes]
rs8037058	0.94[EUR][1000 genomes]
rs8037474	0.95[EUR][1000 genomes]
rs972893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974730	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53666400-53671200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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