Variant report

Variant	rs6493622
Chromosome Location	chr15:53677089-53677090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:53676303..53677625-chr15:54008801..54010344,5	MCF-7	breast:
2	chr15:53676366..53677226-chr15:53947378..53948497,3	MCF-7	breast:
3	chr15:53676316..53677210-chr15:53803959..53804881,5	MCF-7	breast:
4	chr15:53676762..53677326-chr15:53957733..53958557,2	MCF-7	breast:
5	chr15:53676126..53677259-chr15:53878307..53879565,6	MCF-7	breast:
6	chr15:53676613..53677768-chr15:53730185..53730843,4	MCF-7	breast:
7	chr15:53676343..53677288-chr15:53803650..53804851,6	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10083669	0.98[EUR][1000 genomes]
rs1038552	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1038553	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11630701	0.98[EUR][1000 genomes]
rs11635444	0.98[EUR][1000 genomes]
rs11635520	0.98[EUR][1000 genomes]
rs11635540	0.98[EUR][1000 genomes]
rs12148424	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12148432	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12439644	0.95[EUR][1000 genomes]
rs1356242	0.98[EUR][1000 genomes]
rs1356243	0.98[EUR][1000 genomes]
rs1400212	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1400213	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1400214	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1400215	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1501067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501068	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1516407	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1516408	0.98[EUR][1000 genomes]
rs1516409	0.98[EUR][1000 genomes]
rs1516410	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1516414	0.91[EUR][1000 genomes]
rs2055404	0.98[EUR][1000 genomes]
rs2055405	0.98[EUR][1000 genomes]
rs2055406	0.95[EUR][1000 genomes]
rs2414233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4776139	0.98[EUR][1000 genomes]
rs4776140	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs592248	0.90[EUR][1000 genomes]
rs7168732	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7169090	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7169159	0.99[EUR][1000 genomes]
rs7169275	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs8036605	0.96[EUR][1000 genomes]
rs8037058	0.96[EUR][1000 genomes]
rs8037474	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs972893	0.98[EUR][1000 genomes]
rs974730	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833008	chr15:53630471-53780618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1826996	chr15:53671945-53679305	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1049319	chr15:53671945-53785267	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1050374	chr15:53674726-53785267	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53676600-53677400	Enhancers	Pancreas	Pancrea
2	chr15:53676600-53677400	Enhancers	HepG2	liver
3	chr15:53676800-53677400	Enhancers	Liver	Liver

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