Variant report

Variant	rs1517751
Chromosome Location	chr1:72020693-72020694
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12097038	1.00[JPT][hapmap]
rs1213523	1.00[EUR][1000 genomes]
rs1213524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12734782	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12735787	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12745046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12754625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs12759678	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1334002	1.00[EUR][1000 genomes]
rs1334003	1.00[EUR][1000 genomes]
rs1334004	1.00[EUR][1000 genomes]
rs1334005	1.00[EUR][1000 genomes]
rs1334006	1.00[EUR][1000 genomes]
rs1334007	1.00[EUR][1000 genomes]
rs1413369	1.00[EUR][1000 genomes]
rs1611913	1.00[EUR][1000 genomes]
rs1619317	1.00[EUR][1000 genomes]
rs17091292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs17091316	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17091319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs17091337	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs17091365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1760603	1.00[EUR][1000 genomes]
rs1760604	1.00[EUR][1000 genomes]
rs1762721	1.00[EUR][1000 genomes]
rs2007130	1.00[EUR][1000 genomes]
rs2781156	1.00[EUR][1000 genomes]
rs2783046	1.00[EUR][1000 genomes]
rs2783047	1.00[EUR][1000 genomes]
rs2783048	1.00[EUR][1000 genomes]
rs3795698	1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs526710	1.00[EUR][1000 genomes]
rs537762	1.00[EUR][1000 genomes]
rs610454	1.00[EUR][1000 genomes]
rs610876	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs610986	1.00[EUR][1000 genomes]
rs629263	1.00[EUR][1000 genomes]
rs641226	1.00[EUR][1000 genomes]
rs6424434	1.00[EUR][1000 genomes]
rs643801	1.00[EUR][1000 genomes]
rs654735	1.00[EUR][1000 genomes]
rs657021	1.00[EUR][1000 genomes]
rs6662613	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6687400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7535916	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7545353	0.89[ASN][1000 genomes]
rs7551351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9919188	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv916508	chr1:71777392-72046388	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv546474	chr1:71793221-72040354	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1003527	chr1:71989558-72025236	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1001099	chr1:71998264-72022230	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1014047	chr1:72003562-72022230	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv947269	chr1:72018084-72021396	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links