Variant report

Variant	rs1519033
Chromosome Location	chr3:56149656-56149657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11715314	0.82[EUR][1000 genomes]
rs1352011	0.82[EUR][1000 genomes]
rs1485671	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1519034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1519035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6445766	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6445767	0.82[EUR][1000 genomes]
rs6766369	0.82[EUR][1000 genomes]
rs6768695	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9812767	0.82[EUR][1000 genomes]
rs9823389	0.82[EUR][1000 genomes]
rs9825660	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56144600-56152200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:56144800-56152400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:56146000-56151000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:56147200-56152400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:56147400-56152000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:56147600-56152400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:56147800-56152400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:56148000-56152200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:56148200-56150400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr3:56149000-56152000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:56149400-56150000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:56149400-56150400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:56149600-56150000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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