Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1349616	0.85[CEU][hapmap]
rs1485671	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1519027	0.90[EUR][1000 genomes]
rs1519032	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs1519033	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1519034	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1519035	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1949478	0.95[EUR][1000 genomes]
rs2046450	0.85[CEU][hapmap]
rs2316457	0.95[EUR][1000 genomes]
rs2316459	0.85[EUR][1000 genomes]
rs2873169	0.85[CEU][hapmap]
rs4974116	0.95[EUR][1000 genomes]
rs4974117	0.82[CEU][hapmap];0.95[EUR][1000 genomes]
rs6768695	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6787350	0.81[EUR][1000 genomes]
rs7617717	0.95[EUR][1000 genomes]
rs9822225	0.81[EUR][1000 genomes]
rs9825660	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9855895	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56113600-56115000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56113600-56115000	Weak transcription	Aorta	Aorta
3	chr3:56113800-56115000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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