Variant report

Variant	rs9822225
Chromosome Location	chr3:56290474-56290475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12493980	0.85[AMR][1000 genomes]
rs1452211	0.85[AMR][1000 genomes]
rs1485671	0.81[EUR][1000 genomes]
rs2053956	0.85[AMR][1000 genomes]
rs2873304	0.86[EUR][1000 genomes]
rs4585163	0.80[EUR][1000 genomes]
rs4591474	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4974135	0.90[EUR][1000 genomes]
rs4974207	0.90[EUR][1000 genomes]
rs547732	0.85[EUR][1000 genomes]
rs6445766	0.81[EUR][1000 genomes]
rs6445781	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6787350	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6800915	0.80[EUR][1000 genomes]
rs6801004	0.80[EUR][1000 genomes]
rs6801157	0.90[EUR][1000 genomes]
rs690223	0.81[EUR][1000 genomes]
rs935900	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9824530	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56288800-56291400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:56288800-56311400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:56289000-56291600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:56289800-56290600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:56290000-56291400	Weak transcription	Fetal Kidney	kidney
7	chr3:56290200-56291400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:56290200-56291400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:56290200-56303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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