Variant report

Variant	rs6800915
Chromosome Location	chr3:56242724-56242725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56241751..56243485-chr3:56283452..56285737,2	K562	blood:
2	chr3:56241598..56243485-chr3:56283452..56286436,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11715314	0.93[EUR][1000 genomes]
rs12493980	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13091032	0.93[EUR][1000 genomes]
rs1349616	0.82[CEU][hapmap];0.96[EUR][1000 genomes]
rs1352011	0.93[EUR][1000 genomes]
rs1452205	0.96[EUR][1000 genomes]
rs1452211	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1452219	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1466177	0.96[EUR][1000 genomes]
rs1466178	0.84[AFR][1000 genomes]
rs1519032	0.82[CEU][hapmap]
rs1564906	0.83[EUR][1000 genomes]
rs1564908	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2046450	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs2046452	0.96[EUR][1000 genomes]
rs2053956	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2101321	0.93[EUR][1000 genomes]
rs2167620	0.96[EUR][1000 genomes]
rs2316479	0.93[EUR][1000 genomes]
rs2316483	0.96[EUR][1000 genomes]
rs2873169	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs4393875	0.93[EUR][1000 genomes]
rs4585163	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4974125	0.89[EUR][1000 genomes]
rs4974177	0.96[EUR][1000 genomes]
rs6445767	0.93[EUR][1000 genomes]
rs6766369	0.93[EUR][1000 genomes]
rs6776414	0.96[EUR][1000 genomes]
rs6786348	0.93[EUR][1000 genomes]
rs6787350	0.80[EUR][1000 genomes]
rs6801004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802107	0.96[EUR][1000 genomes]
rs7634869	0.93[EUR][1000 genomes]
rs9812767	0.93[EUR][1000 genomes]
rs9822225	0.80[EUR][1000 genomes]
rs9823389	0.93[EUR][1000 genomes]
rs9824530	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs982860	0.96[EUR][1000 genomes]
rs9839130	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56240800-56247000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:56242400-56242800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links