Variant report

Variant	rs1466177
Chromosome Location	chr3:56222171-56222172
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11715314	0.96[EUR][1000 genomes]
rs12493980	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13091032	0.96[EUR][1000 genomes]
rs1349616	1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1352011	0.96[EUR][1000 genomes]
rs1452205	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1452211	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1452219	1.00[EUR][1000 genomes]
rs1519032	1.00[CEU][hapmap]
rs1564906	0.87[EUR][1000 genomes]
rs1564908	1.00[EUR][1000 genomes]
rs2046450	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2046452	1.00[EUR][1000 genomes]
rs2053956	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2101321	0.96[EUR][1000 genomes]
rs2167620	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2316479	0.96[EUR][1000 genomes]
rs2316483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2873169	1.00[CEU][hapmap];0.83[YRI][hapmap];0.96[EUR][1000 genomes]
rs4393875	0.96[EUR][1000 genomes]
rs4585163	0.96[EUR][1000 genomes]
rs4974117	1.00[CEU][hapmap]
rs4974125	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4974177	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6445767	0.96[EUR][1000 genomes]
rs6766369	0.96[EUR][1000 genomes]
rs6776414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779216	0.82[AFR][1000 genomes]
rs6786348	0.96[EUR][1000 genomes]
rs6800915	0.96[EUR][1000 genomes]
rs6801004	0.96[EUR][1000 genomes]
rs6802107	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634869	0.96[EUR][1000 genomes]
rs9812767	0.96[EUR][1000 genomes]
rs9823389	0.96[EUR][1000 genomes]
rs9824530	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs982860	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9839130	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56211800-56222400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56219600-56224200	Weak transcription	Fetal Intestine Large	intestine
3	chr3:56221800-56222200	Enhancers	HSMM	muscle
4	chr3:56221800-56223000	Enhancers	HSMMtube	muscle

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